Publications 2011

Albers, P. and M. Mazzucchelli: Periodic bounce orbits of prescribed energy
In: International mathematics research notices, 2011 (2011) 14, p. 3289-3314
 DOI: 10.1093/imrn/rnq193

Andersson, J. and H. Mikayelyan: C-1,C- alpha regularity for solutions to the p-harmonic thin obstacle problem
In: International mathematics research notices, 2011 (2011) 1, p. 119-134
 MIS-Preprint: 120/2006   DOI: 10.1093/imrn/rnq061

Atay, F. M.: Synchronization and emergence in complex systems
In: Pramana, 77 (2011) 5, p. 855-863
 DOI: 10.1007/s12043-011-0181-5

Atay, F. M. and J. Jost: Qualitative inference in dynamical systems
In: Handbook of statistical systems biology / M. P. H. Stumpf ... (eds.)
Chichester : Wiley & Sons, 2011. - P. 339 - 358
 DOI: 10.1002/9781119970606.ch17

Aurada, M. ; Ebner, M. ; Feischl, M. ; Ferraz-Leite, S. ; Goldenits, P. ; Karkulik, M. ; Mayr, M. and D. Praetorius (eds.): HILBERT : a Matlab implementation of adaptive 2D-BEM
Wien : Institute of Analysis and Scientific Computing; Vienna University of Technology, 2011. - 28 p.
(ASC Report ; 24/2011)
ISBN 978-3-902627-04-9
 LINK: www.asc.tuwien.ac.at/preprint/2011/asc24x2011.pdf

Ay, N. ; Müller, M. and A. Szko\la: Effective complexity of stationary process realizations
In: Entropy, 13 (2011) 6, p. 1200-1211
 MIS-Preprint: 2/2010   DOI: 10.3390/e13061200   ARXIV: arxiv.org/abs/1001.2686

Ay, N. ; Olbrich, E. ; Bertschinger, N. and J. Jost: A geometric approach to complexity
In: Chaos, 21 (2011) 3, art-no. 037103
 MIS-Preprint: 53/2011   DOI: 10.1063/1.3638446

Banjai, L. and V. Gruhne: Efficient long-time computations of time-domain boundary integrals for 2D and dissipative wave equation
In: Journal of computational and applied mathematics, 235 (2011) 14, p. 4207-4220
 MIS-Preprint: 65/2010   DOI: 10.1016/j.cam.2011.03.015

Banjai, L. and Chr. Lubich: An error analysis of Runge-Kutta convolution quadrature
In: BIT, 51 (2011) 3, p. 483-496
 MIS-Preprint: 27/2010   DOI: 10.1007/s10543-011-0311-y

Banjai, L. ; Lubich, Chr. and J. M. Melenk: Runge-Kutta convolution quadrature for operators arising in wave propagation
In: Numerische Mathematik, 119 (2011) 1, p. 1-20
 MIS-Preprint: 59/2010   DOI: 10.1007/s00211-011-0378-z

Bauer, Fr.: Eigenvalues of directed and undirected graphs and their applications
Dissertation, Universität Leipzig, 2011

Benedikt, U. ; Auer, A. A. ; Espig, M. and W. Hackbusch: Tensor decomposition in post-Hartree Fock methods. Pt. 1 : Two-electron integrals and MP2
In: The journal of chemical physics, 134 (2011) 5, art-no. 054118
 MIS-Preprint: 63/2010   DOI: 10.1063/1.3514201

Blesgen, Th. and I. V. Chenchiah: A generalized Cahn-Hilliard equation incorporating geometrically linear elasticity
In: Interfaces and free boundaries, 13 (2011) 1, p. 1-27
 DOI: 10.4171/IFB/246

Borris, M.: Quantum field theory on non-commutative spacetimes
Dissertation, Universität Leipzig, 2011
LINK: nbn-resolving.de/urn:nbn:de:bsz:15-qucosa-67788

Brenier, Y. ; Otto, F. and Chr. Seis: Upper bounds on coarsening rates in demixing binary viscous liquids
In: SIAM journal on mathematical analysis, 43 (2011) 1, p. 114-134
 DOI: 10.1137/090775142

Cagnetti, F. and L. Scardia: An extension theorem in SBV and an application to the homogenization of the Mumford-Shah functional in perforated domains
In: Journal de mathématiques pures et appliquées, 95 (2011) 4, p. 349-381
 DOI: 10.1016/j.matpur.2010.03.002

Ceguerra, R. V. ; Lizier, J. T. and A. Y. Zomaya: Information storage and transfer in the synchronization process in locally-connected networks
In: IEEE Symposium Series in Computational Intelligence (SSCI 2011) - IEEE Symposium on Artificial Life, Paris, France, April 11-15, 2011
Piscataway, N.J. : IEEE, 2011. - P. 54 - 61
 DOI: 10.1109/ALIFE.2011.5954653

Chakraborty, D. ; Gnann, M. V. ; Rings, D. ; Glaser, J. ; Otto, F. ; Cichos, F. and K. Kroy: Generalised Einstein relation for hot Brownian motion
In: epl, 96 (2011) 6, art-no. 60009
 DOI: 10.1209/0295-5075/96/60009   ARXIV: arxiv.org/abs/1110.3734

Cinti, E.: Interpolation inequalities in pattern formation
In: Bruno Pini mathematical analysis seminar, 2 (2011) 1, p. 1-18
 LINK: mathematicalanalysis.unibo.it/article/view/2666

Clarke, Br.: The Riemannian L2 topology on the manifold of Riemannian metrics
In: Annals of global analysis and geometry, 39 (2011) 2, p. 131-163
 MIS-Preprint: 54/2010   DOI: 10.1007/s10455-010-9227-z

Cresson, J. and I. Greff: Non-differentiable embedding of Lagrangian systems and partial differential equations
In: Journal of mathematical analysis and applications, 384 (2011) 2, p. 626-646
 MIS-Preprint: 16/2010   DOI: 10.1016/j.jmaa.2011.06.008

Deng, W. B. ; Wang, D. J. ; Li, W. and Q. A. Wang: English and Chinese language frequency time series analysis
In: Chinese science bulletin, 56 (2011) 34, p. 3717-3722
 DOI: 10.1007/s11434-011-4752-0

Deng, W. ; Li, W. ; Cai, X. and Q. A. Wang: On the application of the cross-correlation in the Chinese fund market : descriptive properties and scaling behaviors
In: Advances in complex systems, 14 (2011) 1, p. 97-109
 MIS-Preprint: 46/2011   DOI: 10.1142/S0219525911002871

Deng, W. ; Li, W. ; Cai, X. and Q. A. Wang: Self-similarity and network perspective of the Chinese fund market
In: Physica / A, 390 (2011) 21/22, p. 3826-3834
 MIS-Preprint: 48/2011   DOI: 10.1016/j.physa.2011.06.029

Deng, W. ; Li, W. ; Cai, X. and Q. A. Wang: The exponential degree distribution in complex networks : non-equilibrium network theory, numerical simulation and empirical data
In: Physica / A, 390 (2011) 8, p. 1481-1485
 MIS-Preprint: 47/2011   DOI: 10.1016/j.physa.2010.12.029

Der, R. and G. Martius: The playful machine : theoretical foundation and practical realization of self-organizing robots
Berlin : Springer, 2011. - XIII, 333 p.
(Cognitive systems monographs ; 15)
ISBN 978-3-642-20253-7 - ISBN 978-3-642-20252-0
 DOI: 10.1007/978-3-642-20253-7

Ding, Y. ; Grünewald, St. and P. J. Humphries: On agreement forests
In: Journal of combinatorial theory / A, 118 (2011) 7, p. 2059-2065
 DOI: 10.1016/j.jcta.2011.04.013

Dondl, P. W. ; Mugnai, L. and M. Röger: Confined elastic curves
In: SIAM journal on applied mathematics, 71 (2011) 6, p. 2205-2226
 DOI: 10.1137/100805339

Drechsler, Fl.: Über die Lösung von elliptischen Randwertproblemen mittels Gebietszerlegungstechniken, Hierarchischer Matrizen und der Methode der finiten Elemente
Dissertation, Universität Leipzig, 2011

Dress, A. W. M. ; Hubert, K.T. ; Koolen, J. and V. Moulton: Blocks and cut vertices of the Buneman graph
In: SIAM journal on discrete mathematics, 25 (2011) 4, p. 1902-1919
 DOI: 10.1137/090764360

Dress, A. W. M. and W. Lin: Dynamics of a discrete-time model of an 'ideal storage' system describing hetero-catalytic processes on metal surfaces
In: International journal of bifurcation and chaos in applied sciences and engineering, 21 (2011) 5, p. 1331-1339
 DOI: 10.1142/S0218127411029197

Eggenhofer, Fl. ; Tafer, H. ; Stadler, P. F. and I. L. Hofacker: RNApredator : fast accessibility-based prediction of sRNA targets
In: Nucleic acids research, 39 (2011), p. W149-W154
 DOI: 10.1093/nar/gkr467

Eltzner, B. and H. Gottschalk: Dynamical backreaction in Robertson-Walker spacetime
In: Reviews in mathematical physics, 23 (2011) 5, p. 531-551
 DOI: 10.1142/S0129055X11004357

Elze, T.: Accurate and precise visual stimulation in neuroscience and psychophysics experiments
Dissertation, Universität Leipzig, 2011

Elze, T. ; Song, Ch. ; Stollhoff, R. and J. Jost: Chinese characters reveal impacts of prior experience on very early stages of perception
In: BMC neuroscience, 12 (2011), art-no. 14
 MIS-Preprint: 3/2011   DOI: 10.1186/1471-2202-12-14

Elze, T. and T. G. Tanner: Dangerous liquids : temporal properties of modern LCD monitors and implications for vision science experiments
In: Perception, 40 (2011) ECVP Abstract Supplement, p. 175
 LINK: www.perceptionweb.com/abstract.cgi

Fabert, O. and P. Rossi: String, dilaton, and divisor equation in symplectic field theory
In: International mathematics research notices, 2011 (2011) 19, p. 4384-4404
 MIS-Preprint: 6/2010   DOI: 10.1093/imrn/rnq251

Fasold, M. ; Langenberger, D. ; Binder, H. ; Stadler, P. F. and St. Hoffmann: DARIO : a ncRNA detection and analysis tool for next-generation sequencing experiments
In: Nucleic acids research, 39 (2011), p. W112-W117
 DOI: 10.1093/nar/gkr357

Fedorov, M. V.: Molecular modeling of solvent-mediated effects in physical and biophysical chemistry
In: Abstracts of papers of the American Chemical Society, 242 (2011), art-no. 12-AEI
 

Fedorov, M. V. ; Arif, R. N. ; Frolov, A. ; Kolar, M. ; Romanova, A. O. and A. G. Rozhin: Salting out in organic solvents : a new route to carbon nanotube bundle engineering
In: Physical chemistry, chemical physics, 13 (2011) 27, p. 12399-12402
 DOI: 10.1039/C1CP21440C

Fedorov, M. V. ; Frolov, A. ; Ratkova, E. L. ; Palmer, D. S. and V. Sergiievskyi: Efficient predictions of physchem properties of biomolecules in aqueous solutions using the reference interaction site model
In: Abstracts of papers of the American Chemical Society, 242 (2011), art-no. 47-COMP
 

Fedorov, M. V. ; Frolov, A. ; Romanova, A. O. ; Kirchner, K. and I. V. Terekhova: Ion effects on biomolecule conformation and complex formation in water
In: Abstracts of papers of the American Chemical Society, 241 (2011), art-no. 317-COMP
 

Fedorov, M. V. ; Goodman, J. M. ; Nerukh, Dm. and St. Schumm: Self-assembly of trehalose molecules on a lysozyme surface : the broken glass hypothesis
In: Physical chemistry, chemical physics, 13 (2011) 6, p. 2294-2299
 DOI: 10.1039/C0CP01705A

Findeiss, Sv. ; Engelhardt, J. ; Prohaska, S. J. and P. F. Stadler: Protein-coding structured RNAs : a computational survey of conserved RNA secondary structures overlapping coding regions in drosophilids
In: Biochimie, 93 (2011) 11, p. 2019-2023
 DOI: 10.1016/j.biochi.2011.07.023   LINK: www.bioinf.uni-leipzig.de/publications/11-012

Findeiss, Sv. ; Langenberger, D. ; Stadler, P. F. and St. Hoffmann: Traces of post-transcriptional RNA modifications in deep sequencing data
In: Biological chemistry, 392 (2011) 4, p. 305-313
 DOI: 10.1515/BC.2011.043   LINK: www.bioinf.uni-leipzig.de/publications/10-036

Finn, R.: Criteria for floating I
In: Journal of mathematical fluid mechanics, 13 (2011) 1, p. 103-115
 MIS-Preprint: 104/2007   DOI: 10.1007/s00021-009-0009-y

Fraternali, F. ; Blesgen, Th. ; Amendola, A. and C. Daraio: Multiscale mass-spring models of carbon nanotube foams
In: Journal of the mechanics and physics of solids, 59 (2011) 1, p. 89-102
 DOI: 10.1016/j.jmps.2010.09.004

Frolov, A.: Computer simulation of salt effects on nanoobjects in dispersions
In: Abstracts of papers of the American Chemical Society, 242 (2011), art-no. 13-AEI
 

Frolov, A.: Ion interactions with carbon nanomaterial surfaces in aqueous and non-aqueous solutions
Dissertation, Universität Duisburg-Essen, 2011
LINK: duepublico.uni-duisburg-essen.de/servlets/DocumentServlet

Frolov, A. ; Arif, R. N. ; Romanova, A. O. ; Rozhin, A. G. and M. V. Fedorov: Effects of salts on carbon nanotubes dispersions : understanding molecular mechanisms
In: Abstracts of papers of the American Chemical Society, 242 (2011), art-no. 245-COLL
 

Frolov, A. ; Kirchner, T. ; Kirchner, K. and M. V. Fedorov: Interactions of ionic liquids and their mixtures with carbon nanomaterials : insights from molecular modeling
In: Abstracts of papers of the American Chemical Society, 242 (2011), art-no. 345-COLL
 

Frolov, A. ; Ratkova, E. L. ; Palmer, D. S. and M. V. Fedorov: Hydration thermodynamics using the reference interaction site model : speed or accuracy?
In: The journal of physical chemistry / B, 115 (2011) 19, p. 6011-6022
 DOI: 10.1021/jp111271c

Frolov, A. ; Rozhin, A. G. and M. V. Fedorov: Ion interactions with the carbon nanotube surface in aqueous solutions
In: Abstracts of papers of the American Chemical Society, 241 (2011), art-no. 178-COMP
 

Gavrilyuk, I. P. and B. N. Khoromskij: Quantized-TT-Cayley transform to compute dynamics and spectrum of high-dimensional Hamiltonians
In: Computational methods in applied mathematics, 11 (2011) 3, p. 273-290
 MIS-Preprint: 43/2011   LINK: www.cmam.info/issues/CMAMv11p273-290.pdf

Gloria, A. and St. Neukamm: Commutability of homogenization and linearization at identity in finite elasticity and applications
In: Annales de l'Institut Henri Poincaré / C, 28 (2011) 6, p. 941-964
 MIS-Preprint: 73/2010   DOI: 10.1016/j.anihpc.2011.07.002

Gloria, A. and F. Otto: An optimal variance estimate in stochastic homogenization of discrete elliptic equations
In: The annals of probability, 39 (2011) 3, p. 779-856
 DOI: 10.1214/10-AOP571

Goudarzi, A. ; Teuscher, Chr. ; Gulbahce, N. and Th. Rohlf: Emergent criticality through adaptive information processing in boolean networks
In: Physical review letters, 108 (2011) 12, art-no. 128702
 MIS-Preprint: 17/2011   DOI: 10.1103/PhysRevLett.108.128702

Grasedyck, L. and W. Hackbusch: An introduction to hierarchical (H-) rank and TT-rank of tensors with examples
In: Computational methods in applied mathematics, 11 (2011) 3, p. 291-304
 LINK: www.cmam.info/issues/CMAMv11p291-304.pdf

Grosse, N.: The Hijazi inequality on conformally parabolic manifolds
In: Differential geometry and its applications, 29 (2011) 6, p. 838-849
 MIS-Preprint: 43/2008   DOI: 10.1016/j.difgeo.2011.08.011

Gu, J. ; Gao, Z. M. and W. Li: Modeling of epidemic spreading with white Gaussian noise
In: Chinese science bulletin, 56 (2011) 34, p. 3683-3688
 DOI: 10.1007/s11434-011-4753-z

Guha, P. and A. Ghose Choudhury: Hamiltonization of higher-order nonlinear ordinary differential equations and the Jacobi last multiplier
In: Acta applicandae mathematicae, 116 (2011) 2, p. 179-197
 DOI: 10.1007/s10440-011-9637-3

Hackbusch, W.: Tensorisation of vectors and their efficient convolution
In: Numerische Mathematik, 119 (2011) 3, p. 465-488
 MIS-Preprint: 48/2010   DOI: 10.1007/s00211-011-0393-0

Harsanyi, I. ; Bopp, Ph. A. ; Vrhovsek, A. and L. Pusztai: On the hydration structure of LiCl aqueous solutions : a Reverse Monte Carlo based combination of diffraction data and Molecular Dynamics simulations
In: Journal of molecular liquids, 158 (2011) 1, p. 61-67
 DOI: 10.1016/j.molliq.2010.10.010

Hellmuth, M.: A local prime factor decomposition algorithm
In: Discrete mathematics, 311 (2011) 12, p. 944-965
 DOI: 10.1016/j.disc.2011.02.016

Holst, M. ; Ovall, J. S. and R. Szypowski: An efficient, reliable and robust error estimator for elliptic problems in R3
In: Applied numerical mathematics, 61 (2011) 5, p. 675-695
 MIS-Preprint: 38/2010   DOI: 10.1016/j.apnum.2011.01.002

Hornung, P.: Approximation of flat W2,2 isometric immersions by smooth ones
In: Archive for rational mechanics and analysis, 199 (2011) 3, p. 1015-1067
 MIS-Preprint: 78/2007   DOI: 10.1007/s00205-010-0374-y

Hornung, P.: Euler-Lagrange equation and regularity for flat minimizers of the Willmore functional
In: Communications on pure and applied mathematics, 64 (2011) 3, p. 367-441
 DOI: 10.1002/cpa.20342

Hornung, P.: Fine level set structure of flat isometric immersions
In: Archive for rational mechanics and analysis, 199 (2011) 3, p. 943-1014
 DOI: 10.1007/s00205-010-0375-x

Hornung, P.: Invertibility and non-invertibility in thin elastic structures
In: Archive for rational mechanics and analysis, 199 (2011) 2, p. 353-368
 MIS-Preprint: 62/2006   DOI: 10.1007/s00205-010-0391-x

Huber, A.: Periodic solutions for the Landau-Lifshitz-Gilbert equation
In: Journal of differential equations, 250 (2011) 5, p. 2462-2484
 DOI: 10.1016/j.jde.2010.11.019   ARXIV: arxiv.org/abs/1006.4765

Huber, A.: The divergence equation in weighted- and L (p(.))-spaces
In: Mathematische Zeitschrift, 267 (2011) 1-2, p. 341-366
 DOI: 10.1007/s00209-009-0622-8

Hwang, H. J. ; Rendall, A. D. and J. J. L. Velazquez: Optimal gradient estimates and asymptotic behaviour for the Vlasov-Poisson system with small initial data
In: Archive for rational mechanics and analysis, 200 (2011) 1, p. 313-360
 MIS-Preprint: 9/2007   DOI: 10.1007/s00205-011-0405-3   ARXIV: arxiv.org/abs/math/0606389

Idrissi, A. ; Vyalov, I. ; Kiselev, M. ; Fedorov, M. V. and P. Jedlovszky: Heterogeneity of the local structure in sub- and supercritical ammonia : a Voronoi polyhedra analysis
In: The journal of physical chemistry / B, 115 (2011) 31, p. 9646-9652
 DOI: 10.1021/jp204078u

Ignat, R. and F. Otto: A compactness result for Landau state in thin-film micromagnetics
In: Annales de l'Institut Henri Poincaré / C, 28 (2011) 2, p. 247-282
 MIS-Preprint: 52/2010   DOI: 10.1016/j.anihpc.2011.01.001

Johannsen, O.: Robuste Präkonditionierung von H-Matrizen
Diplomarbeit, Universität Leipzig, 2011

Jost, J.: Riemannian geometry and geometric analysis
6. edition. - Berlin [u. a.] : Springer, 2011. - xiii, 611 p.
ISBN 978-3-642-21297-0 - ISBN 978-3-642-21298-7
 DOI: 10.1007/978-3-642-21298-7

Jost, J. ; Li-Jost, X. ; Wang, Q. and Ch. Xia: Universal bounds for eigenvalues of the polyharmonic operators
In: Transactions of the American Mathematical Society, 363 (2011) 4, p. 1821-1854
 DOI: 10.1090/S0002-9947-2010-05147-5

Jost, J. and F. M. Simsir: Non-divergence harmonic maps
In: Harmonic maps and differential geometry / E. Loubeau ... (eds.)
Providence, RI : American Mathematical Society, 2011. - P. 231 - 238
 

Kehr, St. ; Bartschat, S. ; Stadler, P. F. and H. Tafer: PLEXY : efficient target prediction for box C/D snoRNAs
In: Bioinformatics, 27 (2011) 2, p. 279-280
 DOI: 10.1093/bioinformatics/btq642   LINK: www.bioinf.uni-leipzig.de/publications/10-032

Key, K. and J. S. Ovall: A parallel goal-oriented adaptive finite element method for 2.5-D electromagnetic modeling
In: Geophysical journal international, 186 (2011) 1, p. 137-154
 MIS-Preprint: 40/2010   DOI: 10.1111/j.1365-246X.2011.05025.x

Khoromskaia, V. ; Khoromskij, B. N. and R. Schneider: QTT representation of the Hartree and exchange operators in electronic structure calculations
In: Computational methods in applied mathematics, 11 (2011) 3, p. 327-341
 MIS-Preprint: 37/2011   LINK: www.cmam.info/issues/CMAMv11p327-341.pdf

Khoromskij, B. N.: O(d log N)-quantics approximation of N-d tensors in high-dimensional numerical modeling
In: Constructive approximation, 34 (2011) 2, p. 257-280
 MIS-Preprint: 55/2009   DOI: 10.1007/s00365-011-9131-1

Khoromskij, B. N.: Tensors-structured numerical methods in scientific computing : survey on recent advances
In: Chemometrics and intelligent laboratory systems, 110 (2011) 1, p. 1-19
 MIS-Preprint: 21/2010   DOI: 10.1016/j.chemolab.2011.09.001

Khoromskij, B. N. ; Khoromskaia, V. and H.-J. Flad: Numerical solution of the Hartree-Fock equation in multilevel tensor-structured format
In: SIAM journal on scientific computing, 33 (2011) 1, p. 45-65
 MIS-Preprint: 44/2009   DOI: 10.1137/090777372

Khoromskij, B. N. and I. V. Oseledets: QTT approximation of elliptic solution operators in higher dimensions
In: Russian journal of numerical analysis and mathematical modelling, 26 (2011) 3, p. 303-322
 MIS-Preprint: 79/2009   DOI: 10.1515/RJNAMM.2011.017

Khoromskij, B. N. ; Sauter, St. A. and A. Veit: Fast quadrature techniques for retarded potentials based on TT/QTT tensor approximation
In: Computational methods in applied mathematics, 11 (2011) 3, p. 342-362
 MIS-Preprint: 42/2011   LINK: www.cmam.info/issues/CMAMv11p342-362.pdf

Khoromskij, B. N. and Chr. Schwab: Tensor-structured Galerkin approximation of parametric and stochastic elliptic PDEs
In: SIAM journal on scientific computing, 33 (2011) 1, p. 364-385
 MIS-Preprint: 9/2010   DOI: 10.1137/100785715

Kitavtsev, G. ; Laurencot, Ph. and B. Niethammer: Weak solutions to lubrication equations in the presence of strong slippage
In: Methods and applications of analysis, 18 (2011) 2, p. 183-202
 MIS-Preprint: 66/2010

Kitavtsev, G. ; Recke, L. and B. Wagner: Centre manifold reduction approach for the lubrication equation
In: Nonlinearity, 24 (2011) 8, p. 2347-2369
 DOI: 10.1088/0951-7715/24/8/010

Kolwankar, K. M. ; Ren, Q. ; Samal, A. and J. Jost: Learning and structure of neuronal networks
In: Pramana, 77 (2011) 5, Special issue, p. 817-826
 DOI: 10.1007/s12043-011-0192-2

Kondrat, S. ; Georgi, N. ; Fedorov, M. V. and A. A. Kornyshev: A superionic state in nano-porous double-layer capacitors : insights from Monte Carlo simulations
In: Physical chemistry, chemical physics, 13 (2011) 23, p. 11359-11366
 DOI: 10.1039/C1CP20798A

Kondrat, S. and A. A. Kornyshev: Superionic state in double-layer capacitors with nanoporous electrodes
In: Journal of physics / Condensed matter, 23 (2011) 2, art-no. 022201
 DOI: 10.1088/0953-8984/23/2/022201

Kosiuk, I. and P. Szmolyan: Scaling in singular perturbation problems : blowing-up a relaxation oscillator
In: SIAM journal on applied dynamical systems, 10 (2011) 4, p. 1307-1343
 MIS-Preprint: 50/2009   DOI: 10.1137/100814470

Krakauer, D. C. ; Collins, J. P. ; Erwin, D. ; Flack, J. C. ; Fontana, W. ; Laubichler, M. D. ; Prohaska, S. J. ; West, G. B. and P. F. Stadler: The challenges and scope of theoretical biology
In: Journal of theoretical biology, 276 (2011) 1, p. 269-276
 DOI: 10.1016/j.jtbi.2011.01.051

Langenberger, D. ; Bartschat, S. ; Hertel, J. ; Hoffmann, St. ; Tafer, H. and P. F. Stadler: MicroRNA or Not MicroRNA?
In: Advances in bioinformatics and computational biology : 6th Brazilian Symposium on Bioinformatics, BSB 2011, Brasilia, Brazil, August 10-12, 2011 ; proceedings / O. N. de Souza ... (eds.)
Berlin [u. a.] : Springer, 2011. - P. 1 - 9
(Lecture notes in computer science ; 6832) 
 DOI: 10.1007/978-3-642-22825-4_1

Lechner, M. ; Findeiss, Sv. ; Steiner, L. ; Marz, M. ; Stadler, P. F. and S. J. Prohaska: Proteinortho : detection of (Co-)orthologs in large-scale analysis
In: BMC bioinformatics, 12 (2011), art-no. 124
 DOI: 10.1186/1471-2105-12-124   LINK: www.bioinf.uni-leipzig.de/publications/11-010

Lee, J. ; Müller, P. F. X. and St. Müller: Compensated compactness, separately convex functions and interpolatory estimates between Riesz transforms and Haar projections
In: Communications in partial differential equations, 36 (2011) 4, p. 547-601
 MIS-Preprint: 7/2008   DOI: 10.1080/03605301003793382   ARXIV: arxiv.org/abs/0902.2102

Lewicka, M. and St. Müller: The uniform Korn-Poincaré inequality in thin domains
In: Annales de l'Institut Henri Poincaré / C, 28 (2011) 3, p. 443-469
 MIS-Preprint: 102/2007   DOI: 10.1016/j.anihpc.2011.03.003

Li, A. X. ; Marz, M. ; Qin, J. and Chr. M. Reidys: RNA-RNA interaction prediction based on multiple sequence alignments
In: Bioinformatics, 27 (2011) 4, p. 456-463
 DOI: 10.1093/bioinformatics/btq659

Li, B. ; Wang, Zh.-X. and Sh.-M. Fei: Quantum discord and geometry for a class of two-qubit states
In: Physical review / A, 83 (2011) 2, art-no. 022321
 MIS-Preprint: 4/2011   DOI: 10.1103/PhysRevA.83.022321

Li, M. ; Fei, Sh.-M. and X. Li-Jost: Bell inequality, separability and entanglement distillation
In: Chinese science bulletin, 56 (2011) 10, p. 945-954
 MIS-Preprint: 1/2011   DOI: 10.1007/s11434-011-4395-1

Li, M. ; Fei, Sh.-M. and X. Li-Jost: Bipartite Bell inequality and maximal violation
In: Communications in theoretical physics, 55 (2011) 3, p. 418-420
 MIS-Preprint: 15/2010   DOI: 10.1088/0253-6102/55/3/09

Li, W. ; Gao, Z.-M. and J. Gu: Effects of variant rates and noise on epidemic spreading
In: Chinese physics letters, 28 (2011) 5, art-no. 058903
 DOI: 10.1088/0256-307X/28/5/058903

Li, W. ; Luo, Y. ; Wang, Y. F. and A. P. Cai: A mean-field Bak-Sneppen model with varying interaction strength
In: Chinese science bulletin, 56 (2011) 34, p. 3639-3642
 DOI: 10.1007/s11434-011-4654-1

Li, X.-Sh. ; Gao, X.-H. and Sh.-M. Fei: Lower bound of concurrence based on positive maps
In: Physical review / A, 83 (2011) 3, p. 034303
 MIS-Preprint: 57/2011   DOI: 10.1103/PhysRevA.83.034303

Lizier, J. T. ; Heinzle, J. ; Horstmann, A. ; Haynes, J.-D. and M. Prokopenko: Multivariate information-theoretic measures reveal directed information structure and task relevant changes in fMRI connectivity
In: Journal of computational neuroscience, 30 (2011) 1, p. 85-107
 DOI: 10.1007/s10827-010-0271-2

Lizier, J. T. ; Heinzle, J. ; Soon, Ch. S. ; Haynes, J.-D. and M. Prokopenko: Spatiotemporal information transfer pattern differences in motor selection
In: Twentieth Annual Computational Neuroscience Meeting : CNS*2011 ; Stockholm, Schweden, 23-28 July 2011 / J.-M. Fellous ... (eds.)
London : BioMed Central, 2011
(BMC neuroscience ; 12 ; Supplement 1) 
DOI: 10.1186/1471-2202-12-S1-P261

Lizier, J. T. ; Pritam, S. and M. Prokopenko: Computational capabilities of small-world Boolean networks
In: Advances in Artificial Life, ECAL 2011 : Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems / T. Lenarts (ed.)
Cambridge, MA : MIT Press, 2011. - P. 463 - 464
 LINK: mitpress.mit.edu/books/chapters/0262297140chap71.pdf

Lizier, J. T. ; Pritam, S. and M. Prokopenko: Information dynamics in small-world boolean networks
In: Artificial life, 17 (2011) 4, p. 293-314
 DOI: 10.1162/artl_a_00040

Lorenz, R. ; Bernhart, St. H. ; Siederdissen, Chr. H. zu ; Tafer, H. ; Flamm, Chr. ; Stadler, P. F. and I. L. Hofacker: ViennaRNA package 2.0
In: Algorithms for molecular biology, 6 (2011), art-no. 26
 DOI: 10.1186/1748-7188-6-26

Lozada-Chavez, I. ; Stadler, P. F. and S. J. Prohaska: `Hypothesis for the modern RNA world' : a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity
In: Origins of life and evolution of the biosphere, 41 (2011) 6, p. 587-607
 DOI: 10.1007/s11084-011-9262-1

Lu, W. ; Atay, F. M. and J. Jost: Consensus and synchronization in discrete-time networks of multi-agents with stochastically switching topologies and time delays
In: Networks and heterogeneous media, 6 (2011) 2, p. 329-349
 MIS-Preprint: 30/2011   DOI: 10.3934/nhm.2011.6.329

Luo, H.: Complete optimisation of multi-configuration Jastrow wave functions by variational transcorrelated method
In: The journal of chemical physics, 135 (2011) 2, art-no. 024109
 DOI: 10.1063/1.3607990

Makita, P. D.: Periodic and homoclinic travelling waves in infinite lattices
In: Nonlinear analysis / A, 74 (2011) 6, p. 2071-2086
 MIS-Preprint: 36/2009   DOI: 10.1016/j.na.2010.11.011

Manning, R. ; Collicott, St. and R. Finn: Occlusion criteria in tubes under transverse body forces
In: Journal of fluid mechanics, 682 (2011), p. 397-414
 MIS-Preprint: 72/2010   DOI: 10.1017/jfm.2011.230

Marathe, K. B.: Geometric topology and field theory on 3-manifolds
In: The mathematics of knots : theory and application / M. Banagl ... (eds.)
Heidelberg [u.a.] : Springer, 2011. - P. 199 - 256
(Contributions in mathematical and computational sciences ; 1)
 MIS-Preprint: 45/2009   DOI: 10.1007/978-3-642-15637-3_8

Marz, M. ; Gruber, A. R. ; Siederdissen, Chr. H. zu ; Amman, F. ; Badelt, St. ; Bartschat, S. ; Bernhart, St. H. ; Beyer, W. ; Kehr, St. ; Lorenz, R. ; Tanzer, A. ; Yusuf, D. ; Tafer, H. ; Hofacker, I. L. and P. F. Stadler: Animal snoRNAs and scaRNAs with exceptional structures
In: RNA biology, 8 (2011) 6, p. 938-946
 DOI: 10.4161/rna.8.6.16603

Masoller, Cr. and F. M. Atay: Complex transitions to synchronization in delay-coupled networks of logistic maps
In: The European physical journal / D, 62 (2011) 1, p. 119-126
 MIS-Preprint: 31/2011   DOI: 10.1140/epjd/e2011-10370-7

Matus, Fr. and J. Rauh: Maximization of the information divergence from an exponential family and criticality
In: IEEE International Symposium on Information Theory Proceedings (ISIT) 2011 : July 31-August 5, 2011 in St. Petersburg, Russia
Piscataway, NY : IEEE, 2011. - P. 903 - 907
 DOI: 10.1109/ISIT.2011.6034269

Menz, G.: Equilibrium dynamics of continuous unbounded spin systems
Dissertation, Rheinische Friedrich-Wilhelms-Universität Bonn, 2011
LINK: hss.ulb.uni-bonn.de/2011/2533/2533.htm

Menz, G.: LSI for Kawasaki dynamics with weak interaction
In: Communications in mathematical physics, 307 (2011) 3, p. 817-860
 MIS-Preprint: 31/2010   DOI: 10.1007/s00220-011-1326-6

Menzel, P. ; Stadler, P. F. and J. Gorodkin: maxAlike : maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences
In: Bioinformatics, 27 (2011) 3, p. 317-325
 DOI: 10.1093/bioinformatics/btq651   LINK: www.bioinf.uni-leipzig.de/publications/10-005

Montufar, G. and N. Ay: Refinements of universal approximation results for deep belief networks and restricted Boltzmann machines
In: Neural computation, 23 (2011) 5, p. 1306-1319
 MIS-Preprint: 23/2010   DOI: 10.1162/NECO_a_00113

Montufar, G. ; Rauh, J. and N. Ay: Expressive power and approximation errors of restricted Boltzmann machines
In: Advances in neural information processing systems 24 : 25th Annual Conference on Neural Information Processing Systems 2011, Granada, Spain December 12th - 15th / J. Shawe-Taylor (ed.)
La Jolla, CA : Neural Information Processing Systems, 2011. - P. 1 - 9
MIS-Preprint: 27/2011   LINK: books.nips.cc/papers/files/nips24/NIPS2011_0307.pdf

Mugnai, L. and M. Röger: Convergence of perturbed Allen-Cahn equations to forced mean curvature flow
In: Indiana University mathematics journal, 60 (2011) 1, p. 41-75
 MIS-Preprint: 13/2009   DOI: 10.1512/iumj.2011.60.3949

Mukherjee, Ch.: Large deviations for Brownian intersection measures
Dissertation, Universität Leipzig, 2011
LINK: nbn-resolving.de/urn:nbn:de:bsz:15-qucosa-74762

Müller, St. and St. Neukamm: On the commutability of homogenization and linearization in finite elasticity
In: Archive for rational mechanics and analysis, 201 (2011) 2, p. 465-500
 DOI: 10.1007/s00205-011-0438-7

Naraparaju, K. K. and J. Schneider: Generalized cross approximation for 3d-tensors
In: Computing and visualization in science, 14 (2011) 3, p. 105-115
 MIS-Preprint: 29/2010   DOI: 10.1007/s00791-011-0166-4

Nitzschmann, J.: Effiziente, approximative Berechnung des Spektrums von Graphen mittels hierarchischer Matrizen
Diplomarbeit, Universität Leipzig, 2011

Nogovitsyn, E. A. and Y. A. Budkov: Development of the theory of a self-consistent field for polyelectrolyte solutions
In: Russian journal of physical chemistry / A, 85 (2011) 8, p. 1363-1368
 DOI: 10.1134/S0036024411080255

Norris, V. ; Zemirline, A. ; Amar, P. ; Audinot, J. N. ; Ballet, P. ; Ben-Jacob, E. ; Bernot, G. ; Beslon, G. ; Cabin, A. ; Fanchon, E. ; Giavitto, J.-L. ; Glade, N. ; Greussay, P. ; Grondin, Y. ; Foster, J. A. ; Hutzler, G. ; Jost, J. ; Kepes, Fr. ; Michel, O. ; Molina, Fr. ; Signorini, J. ; Stano, P. and A. R. Thierry: Computing with bacterial constituents, cells and populations : from bioputing to bactoputing
In: Theory in biosciences, 130 (2011) 3, p. 211-228
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Nussbaum, M. and A. Szko\la: An asymptotic error bound for testing multiple quantum hypotheses
In: The annals of statistics, 39 (2011) 6, p. 3211-3233
 MIS-Preprint: 54/2011   DOI: 10.1214/11-AOS933   ARXIV: arxiv.org/abs/1112.1529

Nussbaum, M. and A. Szko\la: Asymptotically optimal discrimination between pure quantum states
In: Theory of quantum computation, communication, and cryptography : 5th conference, TQC 2010, Leeds, UK, April 13 - 15, 2010, revised selected papers / W. van Dam ... (eds.)
Berlin [u. a.] : Springer, 2011. - P. 1 - 8
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 MIS-Preprint: 1/2010   DOI: 10.1007/978-3-642-18073-6_1   LINK: www.math.cornell.edu/~nussbaum/papers/10-3.pdf

Olbrich, E. ; Achermann, P. and Th. Wennekers: The sleeping brain as a complex system
In: Philosophical transactions of the Royal Society / A, 369 (2011) 1952, p. 3697-3707
 DOI: 10.1098/rsta.2011.0199

Olbrich, E. ; Claussen, J. Chr. and P. Achermann: The multiple time scales of sleep dynamics as a challenge for modelling the sleeping brain
In: Philosophical transactions of the Royal Society / A, 369 (2011) 1952, p. 3884-3901
 DOI: 10.1098/rsta.2011.0082

Oseledets, I. V.: DMRG approach to fast linear algebra in the TT-format
In: Computational methods in applied mathematics, 11 (2011) 3, p. 382-393
 LINK: www.cmam.info/issues/CMAMv11p382-393.pdf

Oseledets, I. V.: Tensor-train decomposition
In: SIAM journal on scientific computing, 33 (2011) 5, p. 2295-2317
 DOI: 10.1137/090752286

Oseledets, I. V. and E. E. Tyrtyshnikov: Algebraic wavelet transform via quantics tensor train decomposition
In: SIAM journal on scientific computing, 33 (2011) 3, p. 1315-1328
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Oseledets, I. V. ; Tyrtyshnikov, E. E. and N. L. Zamarashkin: Tensor-train ranks for matrices and their inverses
In: Computational methods in applied mathematics, 11 (2011) 3, p. 394-403
 LINK: www.cmam.info/issues/CMAMv11p394-403.pdf

Otto, Chr. ; Hoffmann, St. ; Gorodkin, J. and P. F. Stadler: Fast local fragment chaining using sum-of-pair gap costs
In: Algorithms for molecular biology, 6 (2011), art-no. 4
 DOI: 10.1186/1748-7188-6-4   LINK: www.bioinf.uni-leipzig.de/publications/10-039

Otto, F.: Eine Fields-Medaille für Cedric Villani
In: Mitteilungen der Deutschen Mathematiker-Vereinigung, 19 (2011) 1, p. 24-26
 LINK: page.math.tu-berlin.de/~mdmv/archive/19/mdmv-19-1-024.pdf

Otto, F. and Chr. Seis: Rayleigh-Bénard convection : improved bounds on the Nusselt number
In: Journal of mathematical physics, 52 (2011) 8, art-no. 083702
 MIS-Preprint: 6/2011   DOI: 10.1063/1.3623417

Otto, W.: Transcriptional regulatory elements : detection and evolutionary analysis
Dissertation, Universität Leipzig, 2011
LINK: nbn-resolving.de/urn:nbn:de:bsz:15-qucosa-78960

Otto, W. ; Stadler, P. F. and S. J. Prohaska: Phylogenetic footprinting and consistent sets of local aligments
In: Combinatorial pattern matching : 22nd annual symposium, CPM 2011, Palermo, Italy, June 27-29, 2011. proceedings. / R. Giancarlo ... (eds.)
Berlin : Springer, 2011. - P. 118 - 131
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 DOI: 10.1007/978-3-642-21458-5_12

Palmer, D. S. ; Chuev, G. N. ; Ratkova, E. L. and M. V. Fedorov: In silico screening of bioactive and biomimetic solutes using integral equations theory
In: Current pharmaceutical design, 17 (2011) 17, p. 1695-1708
 DOI: 10.2174/138161211796355065

Palmer, D. S. ; Frolov, A. ; Ratkova, E. L. and M. V. Fedorov: Toward a universal model to calculate the solvation thermodynamics of druglike molecules : the importance of new experimental databases
In: Molecular pharmaceutics, 8 (2011) 4, p. 1423-1429
 DOI: 10.1021/mp200119r

Palmer, D. S. ; Ratkova, E. L. ; Frolov, A. ; Sergiievskyi, V. and M. V. Fedorov: Accurate calculation of the hydration free energies of biologically active molecules using the reference interaction site model
In: Abstracts of papers of the American Chemical Society, 241 (2011), art-no. 100-COMP
 

Parikesit, A. A. ; Stadler, P. F. and S. J. Prohaska: Evolution and quantitative comparison of genome-wide protein domain distributions
In: Genes, 2 (2011) 4, p. 912-924
 DOI: 10.3390/genes2040912

Perseke, M. ; Hetmank, J. ; Bernt, M. ; Stadler, P. F. ; Schlegel, M. and D. Bernhard: The enigmatic mitochondrial genome of Rhabdopleura compacta (Pterobranchia) reveals insights into selection of an efficient tRNA system and supports monophyly of Ambulacraria
In: BMC evolutionary biology, 11 (2011), art-no. 134
 DOI: 10.1186/1471-2148-11-134

Perumal, D. ; Samal, A. ; Sakharkar, K. R. and M. K. Sakharkar: Targeting multiple targets in Pseudomonas aeruginosa PAO1 using flux balance analysis of a reconstructed genome-scale metabolic network
In: Journal of drug targeting, 19 (2011) 1, p. 1-13
 DOI: 10.3109/10611861003649753

Prokopenko, M. ; Lizier, J. T. ; Obst, O. and X. R. Wang: Relating Fisher information to order parameters
In: Physical review / E, 84 (2011) 4, art-no. 041116
 DOI: 10.1103/PhysRevE.84.041116

Raincrow, J. D. ; Dewar, K. ; Stocsits, Cl. ; Prohaska, S. J. ; Amemiya, Chr. T. ; Stadler, P. F. and Ch.-hua Chiu: Hox clusters of the Bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in Gnathostome phylogeny
In: Journal of experimental zoology / B, 316 (2011) 6, p. 451-464
 DOI: 10.1002/jez.b.21420   LINK: www.bioinf.uni-leipzig.de/publications/09-040

Ratkova, E. L.: Computational prediction of thermodynamic properties of organic molecules in aqueous solutions
Dissertation, Universität Duisburg-Essen, 2011
LINK: duepublico.uni-duisburg-essen.de/servlets/DocumentServlet

Ratkova, E. L. and M. V. Fedorov: Combination of RISM and cheminformatics for efficient predictions of hydration free energy of polyfragment molecules : application to a set of organic pollutants
In: Journal of chemical theory and computation, 7 (2011) 5, p. 1450-1457
 DOI: 10.1021/ct100654h

Ratkova, E. L. and M. V. Fedorov: On a relationship between molecular polarizability and partial molar volume in water
In: The journal of chemical physics, 135 (2011) 24, art-no. 244109
 DOI: 10.1063/1.3672094

Ratkova, E. L. ; Sergiievskyi, V. ; Chuev, G. N. and M. V. Fedorov: Reference interaction site model with structural descriptors correction as an efficient tool for hydration free energy predictions
In: Abstracts of papers of the American Chemical Society, 241 (2011), art-no. 180-COMP
 

Rauh, J.: Finding the maximizers of the information divergence from an exponential family
Dissertation, Universität Leipzig, 2011
LINK: nbn-resolving.de/urn:nbn:de:bsz:15-qucosa-77355

Rauh, J.: Finding the maximizers of the information divergence from an exponential family
In: IEEE transactions on information theory, 57 (2011) 6, p. 3236-3247
 MIS-Preprint: 82/2009   DOI: 10.1109/TIT.2011.2136230   ARXIV: arxiv.org/abs/0912.4660

Rauh, J. ; Kahle, Th. and N. Ay: Support sets in exponential families and oriented matroid theory
In: International journal of approximate reasoning, 52 (2011) 5, p. 613-626
 MIS-Preprint: 28/2009   DOI: 10.1016/j.ijar.2011.01.013   ARXIV: arxiv.org/abs/0906.5462

Reidys, Chr. M. ; Huang, F. W. D. ; Andersen, J. E. ; Penner, R. C. ; Stadler, P. F. and M. E. Nebel: Topology and prediction of RNA pseudoknots
In: Bioinformatics, 27 (2011) 8, p. 1076-1085
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Romanova, A. O.: Ion effects on a-cyclodextrin-aromatic carboxylic acids in aqueous solution : molecular mechanisms
In: Abstracts of papers of the American Chemical Society, 242 (2011), art-no. 59-AEI
 

Romanova, A. O. ; Frolov, A. and M. V. Fedorov: Counter-ion effects on ionizable biomolecules in aqueous electrolyte solutions : understanding molecular mechanisms
In: Abstracts of papers of the American Chemical Society, 242 (2011), art-no. 396-COLL
 

Rubinov, M. ; Lizier, J. T. ; Prokopenko, M. and M. Breakspear: Maximized directed information transfer in critical neuronal networks
In: Twentieth Annual Computational Neuroscience Meeting : CNS*2011 ; Stockholm, Schweden, 23-28 July 2011 / J.-M. Fellous ... (eds.)
London : BioMed Central, 2011
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DOI: 10.1186/1471-2202-12-S1-P18

Saeedi, H. ; Moghadam, M. M. ; Mollahasani, N. and G. N. Chuev: A CAS wavelet method for solving nonlinear Fredholm integro-differential equations of fractional order
In: Communications in nonlinear science and numerical simulation, 16 (2011) 3, p. 1154-1163
 MIS-Preprint: 4/2010   DOI: 10.1016/j.cnsns.2010.05.036

Saeedi, H. ; Mollahasani, N. ; Moghadam, M. M. and G. N. Chuev: An operational Haar wavelet method for solving fractional Volterra integral equations
In: International journal of applied mathematics and computer science, 21 (2011) 3, p. 535-547
 MIS-Preprint: 80/2009   DOI: 10.2478/v10006-011-0042-x

Samal, A. and O. Martin: Randomizing genome-scale metabolic networks
In: PLoS one, 6 (2011) 7, art-no. 22295
 MIS-Preprint: 74/2010   DOI: 10.1371/journal.pone.0022295

Samal, A. ; Wagner, A. and O. Martin: Environmental versatility promotes modularity in genome-scale metabolic networks
In: BMC systems biology, 5 (2011), art-no. 135
 MIS-Preprint: 39/2013   DOI: 10.1186/1752-0509-5-135

Scardia, L. ; Schlömerkemper, A. and Ch. Zanini: Boundary layer energies for nonconvex discrete systems
In: Mathematical models and methods in applied sciences, 21 (2011) 4, p. 777-817
 MIS-Preprint: 4/2009   DOI: 10.1142/S0218202511005210

Schindler, Chr.: Niedrig-Rang-Approximation linearer Systeme mit Tensorprodukt-Struktur am Beispiel der Poisson-Gleichung
Diplomarbeit, Universität Leipzig, 2011

Schindler, S.: Fitness-based mating: A systematic analysis of a new preference model
Dissertation, Universität Leipzig, 2011
LINK: nbn-resolving.de/urn:nbn:de:bsz:15-qucosa-66485

Schwinger, St.: A posteriori error analysis of effective one-particle electronic structure calculations
Dissertation, Technische Universität Berlin, 2011

Seis, Chr.: Scaling laws in two models for thermodynamically driven fluid flow
Dissertation, Universität Leipzig, 2011
LINK: nbn-resolving.de/urn:nbn:de:bsz:15-qucosa-81228

Sergiievskyi, V.: 3DRISM bridge functional for the aqueous solutions of carbon nanomaterials
In: Condensed matter physics (2011), vol, pp not yet known
ARXIV: de.arxiv.org/abs/1112.0998v1

Sergiievskyi, V.: Fast calculation of thermodynamic and structural parameters of solutions using the 3DRISM model and the multi-grid method
In: Russian chemical bulletin (2011), vol, pp not yet known
ARXIV: de.arxiv.org/abs/1111.2033v1

Sergiievskyi, V.: Model for calculating the free energy of hydration of bioactive compounds based on integral equation theory of liquids
In: Russian journal of physical chemistry / B, 5 (2011) 2, p. 326-331
 DOI: 10.1134/S1990793111020382

Sergiievskyi, V. ; Hackbusch, W. and M. V. Fedorov: Multigrid solver for the reference interaction site model of molecular liquids theory
In: Journal of computational chemistry, 32 (2011) 9, p. 1982-1992
 DOI: 10.1002/jcc.21783

Sethia, G. C. ; Sen, A. and F. M. Atay: Phase-locked solutions and their stability in the presence of propagation delays
In: Pramana, 77 (2011) 5, p. 905-915
 DOI: 10.1007/s12043-011-0184-2

Siederdissen, Chr. H. zu ; Bernhart, St. H. ; Stadler, P. F. and I. L. Hofacker: A folding algorithm for extended RNA secondary structures
In: Bioinformatics, 27 (2011) 13, p. i129-i136
 DOI: 10.1093/bioinformatics/btr220

Sonntag, M. ; Englitz, B. ; Typlt, M. and R. Rübsamen: The calyx of Held develops adult-like dynamics and reliability by hearing onset in the mouse in vivo
In: The journal of neuroscience, 31 (2011) 18, p. 6699-6709
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Spiegler, A. ; Knösche, Th. R. ; Schwab, K. ; Haueisen, J. and F. M. Atay: Modeling brain resonance phenomena using a neural mass model
In: PLoS computational biology, 7 (2011) 12, art-no. e1002298
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Stadler, P. F. and D. Rose: Molecular evolution of the non-coding eosinophil granule ontogeny transcript
In: Frontiers in Genetics, 2 (2011), art-no. 69
 DOI: 10.3389/fgene.2011.00069   LINK: www.bioinf.uni-leipzig.de/publications/11-007

Steiner, L. ; Stadler, P. F. and M. Dysouw: A Pipeline for computational historical linguistics
In: Language Dynamics and Change, 1 (2011) 1, p. 89-127
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Stollhoff, R. ; Jost, J. ; Elze, T. and I. Kennerknecht: Deficits in long-term recognition memory reveal dissociated subtypes in congenital prosopagnosia
In: PLoS one, 6 (2011) 1, art-no. e15702
 MIS-Preprint: 2/2011   DOI: 10.1371/journal.pone.0015702

Stollhoff, R. ; Kennerknecht, I. ; Elze, T. and J. Jost: A computational model of dysfunctional facial encoding in congenital prosopagnosia
In: Neural networks, 24 (2011) 6, p. 652-664
 MIS-Preprint: 9/2011   DOI: 10.1016/j.neunet.2011.03.006

Tafer, H. ; Amman, F. ; Eggenhofer, Fl. ; Stadler, P. F. and I. L. Hofacker: Fast accessibility-based prediction of RNA-RNA interactions
In: Bioinformatics, 27 (2011) 14, p. 1934-1940
 DOI: 10.1093/bioinformatics/btr281

Tramontano, A. ; Donath, A. ; Bernhart, St. H. ; Reiche, Kr. ; Boehmdorfer, G. ; Stadler, P. F. and A. Bachmair: Deletion analysis of the 3 ' long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer
In: Virology, 412 (2011) 1, p. 75-82
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Tuckwell, H. C. and J. Jost: The effects of various spatial distributions of weak noise on rhythmic spiking
In: Journal of computational neuroscience, 30 (2011) 2, p. 361-371
 MIS-Preprint: 32/2010   DOI: 10.1007/s10827-010-0260-5

Tuckwell, H. C. and P. Shipman: Predicting the probability of persistence of HIV infection with the standard model
In: Journal of biological systems, 19 (2011) 4, p. 747-762
 MIS-Preprint: 14/2011   DOI: 10.1142/S0218339011004147   ARXIV: arxiv.org/abs/1107.3459

Ullrich, A. ; Rohrschneider, M. ; Scheuermann, G. ; Stadler, P. F. and Chr. Flamm: In silico evolution of early metabolism
In: Artificial life, 17 (2011) 2, p. 87-108
 DOI: 10.1162/artl_a_00021

Vieira, G. ; Sabarly, V. ; Bourguignon, P.-Y. ; Durot, M. ; Fevre, Fr. ­cois L. ; Mornico, D. ; Vallenet, D. ; Bouvet, O. ; Denamur, E. ; Schachter, V. and Cl. Medigue: Core and Panmetabolism in Escherichia coli
In: Journal of bacteriology, 193 (2011) 6, p. 1461-1472
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Vyalov, I. ; Kiselev, M. ; Tassaing, T. ; Soetens, J. C. ; Fedorov, M. V. ; Damay, P. and A. Idrissi: Reorientation relaxation in supercritical ammonia
In: Journal of molecular liquids, 159 (2011) 1, p. 31-37
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Wang, X. R. ; Lizier, J. T. and M. Prokopenko: Fisher information at the edge of chaos in random boolean networks
In: Artificial life, 17 (2011) 4, p. 315-329
 DOI: 10.1162/artl_a_00041

Wang, X. R. ; Miller, J. M. ; Lizier, J. T. ; Prokopenko, M. and L. F. Rossi: Measuring information storage and transfer in swarms
In: Advances in Artificial Life, ECAL 2011 : Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems / T. Lenarts (ed.)
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Washietl, St. ; Findeiss, Sv. ; Müller, St. A. ; Kalkhof, St. ; von Bergen, M. ; Hofacker, I. L. ; Stadler, P. F. and N. Goldman: RNAcode : robust discrimination of coding and noncoding regions in comparative sequence data
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Xu, L.: On Galerkin approximations for the Zakai equation with diffusive and point process observations
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