Brownian motion tree models are toric

Bernd Sturmfels, Caroline Uhler, and Piotr Zwiernik

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Submission date: 27. Feb. 2019
Pages: 24
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Abstract:
Felsenstein's classical model for Gaussian distributions on a phylogenetic tree is shown to be a toric variety in the space of concentration matrices. We present an exact semialgebraic characterization of this model, and we demonstrate how the toric structure leads to exact methods for maximum likelihood estimation. Our results also give new insights into the geometry of ultrametric matrices.