Sofja Kovalevskaja Research Group: Structure of Evolution
Head:
Matteo Smerlak (Email)
Phone:
+49 (0) 341 - 9959 - 546
Fax:
+49 (0) 341 - 9959 - 658
Address:
Inselstr. 22
04103 Leipzig
Institute publications of the group
Journal Articles
Nono, Cyrille Merleau ; Pénisson, Sophie ; Gerrish, Philip J. ; Elena, Santiago F. and Smerlak, Matteo:
Why are viral genomes so fragile? The bottleneck hypothesis
In: PLoS computational biology,
17 (2021) 7, e1009128
Bibtex DOI: 10.1371/journal.pcbi.1009128 ARXIV: https://www.biorxiv.org/content/10.1101/2021.01.23.427881v1 LINK: https://www.researchgate.net/publication/348730822Salahshour, Mohammad:
Freedom to choose between public resources promotes cooperation
In: PLoS computational biology,
17 (2021) 2, e1008703
Bibtex DOI: 10.1371/journal.pcbi.1008703 LINK: https://www.biorxiv.org/content/10.1101/2020.09.30.320382v1 CODE: https://zenodo.org/record/4294725Salahshour, Mohammad:
Evolution of prosocial punishment in unstructured and structured populations and in
the presence of antisocial punishment
In: PLOS ONE,
16 (2021) 8, e0254860
Bibtex DOI: 10.1371/journal.pone.0254860Salahshour, Mohammad and Rouhani, Shahin:
Collective movement and collective information acquisition with signaling
In: Frontiers in physics,
9 (2021), 668283
Bibtex DOI: 10.3389/fphy.2021.668283 ARXIV: https://arxiv.org/abs/2010.14190Schulz, Steven ; Boyer, Sébastien ; Smerlak, Matteo ; Cocco, Simona ; Monasson, Remi ; Nizak, Clément and Rivoire, Olivier:
Parameters and determinants of responses to selection in antibody libraries
In: PLoS computational biology,
17 (2021) 3, e1008751
Bibtex DOI: .org/10.1101/712539 ARXIV: https://www.biorxiv.org/content/10.1101/712539v1 LINK: https://hal.archives-ouvertes.fr/hal-02322339Smerlak, Matteo:
Intermittency as metastability : a predictive approach to evolution in disordered
environments
In: epl,
134 (2021) 2, 28002
Bibtex DOI: 10.1209/0295-5075/134/28002 ARXIV: https://arxiv.org/abs/2009.03608Smerlak, Matteo:
Quasi-species evolution maximizes genotypic reproductive value (not fitness or flatness)
In: Journal of theoretical biology,
522 (2021), 110699
Bibtex DOI: 10.1016/j.jtbi.2021.110699 ARXIV: https://www.biorxiv.org/content/10.1101/2021.02.23.432496v1Smerlak, Matteo:
Neutral quasispecies evolution and the maximal entropy random walk
In: Science advances,
7 (2021) 16, eabb2376
Bibtex DOI: 10.1126/sciadv.abb2376Zadorin, Anton and Rivoire, Olivier:
Sex as information processing : optimality and evolution
In: Physical review / E,
103 (2021) 6, 062413
Bibtex DOI: 10.1103/PhysRevE.103.062413 ARXIV: https://arxiv.org/abs/2102.05459Hatton, Ian A. and Galbraith, Eric D.:
Commentary on ''Key ecological parameters of immotile versus locomotive life'' by
Gorshkov and Makarieva
In: Russian journal of ecosystem ecology,
5 (2020) 2, 5
Bibtex DOI: 10.21685/2500-0578-2020-2-5Salahshour, Mohammad:
Coevolution of cooperation and language
In: Physical review / E,
102 (2020) 4, 042409
Bibtex DOI: 10.1103/PhysRevE.102.042409Tal, Omri and Tran, Tat Dat:
Adaptive bet-hedging revisited : considerations of risk and time horizon
In: Bulletin of mathematical biology,
82 (2020) 4, 50
Bibtex MIS-Preprint: 36/2019 DOI: 10.1007/s11538-020-00729-8 ARXIV: https://arxiv.org/abs/2003.06793Tchappi, Igor Haman ; Galland, Stéphane ; Kamla, Vivient Corneille ; Kamgang, Jean-Claude ; Nono, Cyrille Merleau and Zhao, Hui:
Holonification model for a multilevel agent-based system : application to road traffic
In: Personal and ubiquitous computing,
23 (2019) 5/6, p. 633-651
Bibtex DOI: 10.1007/s00779-018-1181-ySmerlak, Matteo:
Natural selection as coarsening
In: Journal of statistical physics,
172 (2018) 1, p. 105-113
Bibtex DOI: 10.1007/s10955-017-1925-5 ARXIV: https://arxiv.org/abs/1707.05317Tal, Omri and Tran, Tat Dat:
New perspectives on multilocus ancestry informativeness
In: Mathematical biosciences,
306 (2018), p. 60-81
Bibtex MIS-Preprint: 24/2018 DOI: 10.1016/j.mbs.2018.10.011 LINK: https://www.biorxiv.org/content/early/2018/03/29/273466Tal, Omri ; Tran, Tat Dat and Portegies, Jacobus W.:
From typical sequences to typical genotypes
In: Journal of theoretical biology,
419 (2017), p. 159-183
Bibtex MIS-Preprint: 66/2016 DOI: 10.1016/j.jtbi.2017.02.010 ARXIV: http://biorxiv.org/content/early/2016/10/06/079491Granot, Yaron ; Tal, Omri ; Rosset, Saharon and Skorecki, Karl:
On the apportionment of population structure
In: PLOS ONE,
11 (2016) 8, e0160413
Bibtex MIS-Preprint: 28/2016 DOI: 10.1371/journal.pone.0160413 ARXIV: http://biorxiv.org/content/early/2016/05/25/033852Tal, Omri:
From typical sequences to typical genotype
In: Human heredity,
80 (2015) 3, p. 122-122
Bibtex DOI: 10.1159/000445228 ARXIV: http://www.biorxiv.org/content/early/2016/10/13/079491Publications in Books and Conference Proceedings
Nono, Cyrille Merleau and Smerlak, Matteo:
A simple evolutionary algorithm guided by local mutations for an efficient RNA design
In: GECCO '21 : proceedings of the genetic and evolutionary computation conference ; Lille
France 10 July, 2021- 14 July, 2021 / Francisco Chicano (ed.)
Bibtex DOI: 10.1145/3449639.3459280New York : ACM, 2021. - P. 1027-1034
Hatton, Ian A.:
What regulates growth across levels of organization?
In: Unsolved problems in ecology / Andrew Dobson... (eds.)
Bibtex DOI: 10.1515/9780691195322Princeton : Princeton University Press, 2020. - P. 203-217
Tal, Omri:
Quantifying the high-dimensional information of population structure
In: 42nd European Mathematical Genetics Meeting (EMGM) 2014, April 1-2, 2014, Cologne,
Germany : Abstracts
Basel : Karger, 2014
(Human Heredity ; 76 (2013) 2)
Bibtex DOI: 10.1159/000360587Pasemann, Frank ; Dieckmann, Ulf and Steinmetz, Ulrich:
Evolving structure and function of neurocontrollers
In: Proceedings of the 1999 Congress on Evolutionary Computation / CEC 99, July 6 - 9,
1999
Bibtex MIS-Preprint: 27/1999 Piscataway, NJ : IEEE Service Center, 1999
Pasemann, Frank and Dieckmann, Ulf:
Evolved neurocontrollers for pole-balancing
In: Biological and artificial computation : from neuroscience to technology ; International
Work-Conference on Artificial and Natural Neural Networks, IWANN'97 Lanzarote, Canary
Islands, Spain, June 4-6, 1997 proceedings / José Mira (ed.)
Berlin : Springer, 1997. - P. 1279-1287
(Lecture notes in computer science ; 1240)
Bibtex MIS-Preprint: 37/1997 DOI: 10.1007/BFb0032588Preprints
Charlat, Sylvain ; Ariew, André ; Bourrat, Pierrick ; Ruiz, Maria Ferreira ; Heams, Thomas ; Huneman, Philippe ; Krishna, Sandeep ; Lachmann, Michael ; Lartillot, Nicolas ; Le Sergeant d'Hendecourt, Loius ; Malaterre, Christope ; Nghe, Philippe ; Rajon, Etienne ; Rivoire, Olivier ; Smerlak, Matteo and Zeravcic, Zorana:
Natural selection beyond life? A workshop report
Repository Open AccessCorberi, Federico ; Cugliandolo, Leticia F. ; Espositio, Marco ; Mazzarisi, Onofrio and Picco, Marco:
How many phases nucleate in the bidimensional Potts model?
Repository Open AccessHatton, Ian A. ; Heneghan, Ryan F. ; Bar-On, Yinon M. and Galbraith, Eric D.:
The global ocean size-spectrum from bacteria to whales
Repository Open AccessMazzarisi, Onofrio ; Azevedo-Lopes, Amanda ; Arenzon, Jeferson J. and Corberi, Federico:
Maximal diversity and Zipf's law
Repository Open AccessOpuu, Vaitea ; Nono, Cyrille Merleau and Smerlak, Matteo:
RAFFT : Efficient prediction of RNA folding pathways using the fast Fourier transform
Repository Open AccessSalahshour, Mohammad:
Evolution of cooperation in costly institutes
Repository Open AccessSalahshour, Mohammad:
Playing soft with cooperators emerges as a moral norm and promotes cooperation in
evolutionary games
Repository Open AccessSmerlak, Matteo:
Convergence without resummation : an iterative approach to perturbative eigenvalue
problems
Repository Open AccessKenmoe, Maseim ; Smerlak, Matteo and Zadorin, Anton:
Dynamical perturbation theory for eigenvalue problems
Repository Open AccessKlimek, Aleksander and Rosati, Tommaso Cornelis:
The spatial \(\lambda\)-Fleming-Viot process in a random environment
Repository Open AccessSalahshour, Mohammad:
Evolution of cooperation and consistent personalities in public goods games
Repository Open AccessSalahshour, Mohammad:
The evolution of punishing institutions
Repository Open AccessSmerlak, Matteo:
Localization of neutral evolution : selection for mutational robustness and the maximal
entropy random walk
Repository Open AccessYamshchikov, Ivan P. ; Nono, Cyrille Merleau ; Samenko, Igor and Jost, Jürgen:
It means more if it sounds good : yet another hypothesis concerning the evolution
of polysemous words
Bibtex MIS-Preprint: 36/2020 ARXIV: https://arxiv.org/abs/2003.05758 LINK: https://www.researchgate.net/publication/339898823
Repository Open AccessBiswas, Niloy ; Etheridge, Alison and Klimek, Aleksander:
The spatial Lambda-Fleming-Viot process with fluctuating selection
Repository Open AccessChetwynd-Diggle, Jonathan and Klimek, Aleksander:
Rare mutations in the spatial Lambda-Fleming-Viot model in a fluctuating environment
and SuperBrownian Motion
Repository Open AccessSmerlak, Matteo:
Effective potential reveals evolutionary trajectories in complex fitness landscapes
Repository Open Access