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We describe the numerical scheme for the discretization and solution of 2D elliptic equations with strongly varying piecewise constant coefficients arising in stochastic homogenization. An efficient stiffness matrix generation scheme based on assembling of the local Kronecker product matrices is introduced. Spectral properties of the discrete stochastic operators are studied by estimation of the density of spectrum for the family of stochastic realizations. The resulting large linear systems of equations are solved by the preconditioned CG iteration with the convergence rate that is independent of the grid size and the variation in jumping coefficients (contrast). The numerical analysis on the convergence rates in stochastic homogenization theory is provided. This includes the calculation of the homogenized coefficient matrix and the subsequent estimation on the limit of empirical average/variance. The Central Limit Theorem (CLT) scaling in the size of Representative Volume Element