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Events
Challenges in experimental data integration within genome-scale metabolic models

conference

10/10/2009 11/10/2009

Challenges in experimental data integration within genome-scale metabolic models

Université Pierre et Marie Curie, Institut Henri Poincaré

Lecture room

The workshop is supported by the Max Planck Society (MPG) and the Centre national de la recherche scientifique (CNRS), through the CNRS-MPG joint program in systems biology.

Speakers

Daniela Calvetti

Case Western Reserve University Homepage

Oliver Ebenhöh

King's College, University of Aberdeen Homepage

David Fell

Oxford Brookes University Homepage

Matthias Heinemann

ETH Zurich Homepage

Andreas Kremling

Max Planck Institute for Complex Technical Systems Homepage

Wolfram Liebermeister

Humboldt University Berlin Homepage

Costas D. Maranas

Penn State University Homepage

Olivier C. Martin

Université Paris Sud Homepage

Balázs Papp

Biological Research Center of the Hungarian Academy of Sciences Homepage

Kiran Raosaheb Patil

Technical University of Denmark Homepage

Eytan Ruppin

Tel Aviv University Homepage

Marie-France Sagot

CNRS & INRIA Helix project

Stefan Schuster

University of Jena Homepage

Tomer Shlomi

Technion University Homepage

Oct 10, 2009
08:30	Registration
09:00	Opening Remarks by Jürgen Jost andIntroduction to CNRS-MPG Joint Program in Systems Biology by François Képès
09:15	Marie-France Sagot (CNRS & INRIA Helix project, Lyon, France) Precursor sets in metabolic networks: Towards understanding metabolic dialog between two or more symbiotic partners
09:15	Session I - Chair: Klaus Scherrer
10:00	Stefan Schuster (University of Jena, Jena, Germany) Speed vs. efficiency - Has molar yield in metabolic networks been maximized during evolution?
10:45	Coffee Break
11:00	Costas D. Maranas (Penn State University, USA) Genome-scale metabolic model reconstruction, curation and redesign
11:00	Session II - Chair: Philippe Marlière
11:45	Kiran Raosaheb Patil (Technical University of Denmark, Lyngby, Denmark) A look on the sweet side of life - through genome scale models
12:30	Lunch
14:00	David Fell (Oxford Brookes University, Oxford, United Kingdom) Checking and analysing genome-scale metabolic models
14:00	Session III - Chair: Christine Dillmann
14:45	Eytan Ruppin (Tel Aviv University, Israel) Towards large scale in silico modeling of human metabolism Slides
15:30	Coffee Break
16:00	Olivier C. Martin (Université Paris Sud, Paris, France) Neutral networks in metabolic network space
16:00	Session IV - Chair: Erkki Somersalo
16:45	Marc-Thorsten Huett (Jacobs University, Bremen, Germany) Consistency of gene expression profiles with metabolic flux predictions Abstract
17:10	Coffee Break
17:25	Session V
17:25	Panel Discussion: Moderated by Mark Poolman and Pierre-Yves Bourguignon
19:00	Conference Dinner
Oct 11, 2009
09:00	Session I - Chair: Jürgen Jost
09:00	Oliver Ebenhöh (King's College, University of Aberdeen, Aberdeen, United Kingdom) Integrating omics data into modeling: What can we learn about the structure, function and evolution of metabolic networks?
09:45	Balázs Papp (Biological Research Center of the Hungarian Academy of Sciences, Szeged, Hungary) Understanding and predicting genetic interactions in yeast metabolism Slides
10:30	Coffee Break
10:45	Matthias Heinemann (ETH Zurich, Zurich, Switzerland) Insights from quatitative metabolome data via network-embedded thermodynamic analysis
10:45	Session II - Chair: Eric Denamur
11:30	Daniela Calvetti (Case Western Reserve University, Cleveland, Ohio, USA) Predictive computational models for complex metabolic systems within a Bayesian framework
12:15	Lunch
14:00	Session III - Chair: Alexander Bockmayr
14:00	Andreas Kremling (Max Planck Institute for Complex Technical Systems, Magdeburg, Germany) From motifs to genome scale models – progress and challenges
14:45	Wolfram Liebermeister (Humboldt University Berlin, Berlin, Germany) Some methods for model construction and data integration in metabolic modelling
15:30	Tomer Shlomi (Technion University, Israel) Metabolic flux prediction via gene expression and metabolomics Slides
16:15	Coffee Break
16:30	Session IV - Chair: Daniel Kahn
16:30	Christoph Kaleta (University Jena, Jena, Germany) Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns Abstract
16:55	Panel Discussion: Moderated by Daniel Kahn
17:55	Closing remarks by Olivier C. Martin

Participants

Heike Aßmus

MPI for Molecular Plant Physiology, Potsdam-Golm

Georg Basler

Max Planck Institute for Molecular Plant Physiology, Potsdam

Tomer Benyamini

Tel Aviv University

Alexander Bockmayr

FU Berlin

Pierre-Yves Bourguignon

Max Planck Institute for Mathematics in the Sciences, Leipzig

Matteo Brilli

Université Lyon 1, Villeurbanne, Lyon

Roman Brinzanik

MPI for Molecular Genetics, Berlin

Ana Rita Brochado

Technical University of Denmark, Lyngby

Daniela Calvetti

Case Western Reserve University, Cleveland, Ohio

Pablo Carbonell

Genopole/University of Evry

Luis F. de Figueiredo

Friedrich-Schiller-Universität Jena

Anne de la Foye

INRA (Institut National de la Recherche Agronomique), Saint-Genès-Champanelle

Erick Denamur

INSERM, Paris

Christine Dillmann

University of Paris-Sud, Gif sur Yvette

Victoria Dominguez

INRA, Massy

Samuel Drulhe

Institut Pasteur, Paris

Xavier Duportet

AgroParisTech

Oliver Ebenhöh

King's College, University of Aberdeen

David Fell

Oxford Brookes University

Matthias Heinemann

ETH Zurich

Margit Heiske

INSERM U688, Université Victor-Ségalen, Bordeaux

Bertrand Hirel

Insitut National de la Recherche Agronomique, Versailles Cedex

Marc-Thorsten Huett

Jacobs University, Bremen

Roberto Incitti

Université Paris 12/INSERM, PARIS

Livnat Jerby

Tel Aviv University

Jürgen Jost

Max Planck Institute for Mathematics in the Sciences, Leipzig

Jim Joy

Max Planck Institute for Dynamics of Complex Technical Systems Magdeburg

Daniel Kahn

Université Lyon 1, Villeurbanne

Christoph Kaleta

University Jena

François Képès

Genopole, Evry

Andreas Kremling

Max Planck Institute for Complex Technical Systems, Magdeburg

Francois Le Fevre

Genoscope, Evry

Sophie Lemaire

Université Paris Sud 11, Orsay

Caroline Lemerle

CRG, Barcelona

Guillaume Letellier

Metabolic Explorer, Saint Bauzire

Wolfram Liebermeister

Humboldt University Berlin

Nicolas Loira

Université Bordeaux I, Talence

Costas D. Maranas

Penn State University

Philippe Marliere

Global Bioenergies, Evry

Olivier C. Martin

Université Paris Sud

Joao Matias Rodrigues

University of Zurich

Jean-Pierre Mazat

INSERM U688 / Université Bordeaux 2, Bordeaux-cedex

Johnjoe McFadden

University of Surrey, Guildford

Denis Mestivier

Institut Jacques Monod - CNRS UMR7592 - Universite Paris Diderot

Louise Mølgaard

Technical University of Denmark, Kgs. Lyngby

Christine Nazaret

University of Bordeaux

Thibault Nidelet

INRA, Gif sur Yvette

Balázs Papp

Biological Research Center of the Hungarian Academy of Sciences, Szeged

Kiran Raosaheb Patil

Technical University of Denmark, Lyngby

Sabine Peres

Sysdiag UMR 3145 CNRS, MONTPELLIER Cedex 4

Jon Pey Pérez

CEIT, San Sebastian

Francisco J Planes Pedreño

CEIT, University of Navarra, San Sebastian

Adam Podhorski

Tecnun, University of Navarra, Donostia - San Sebastian

Mark Poolman

Oxford Brookes

Jacek Puchalka

Helmholtz Centre for Infection Research, Braunschweig

Alberto Rezola

CEIT, University of Navarra, SAN SEBASTIAN

Miguel Rocha

Univ. Minho, Braga

Thimo Rohlf

Genopole, Evry

Eytan Ruppin

Tel Aviv University

Marie-France Sagot

CNRS & INRIA Helix project, Lyon

Areejit Samal

Max Planck Institute for Mathematics in the Sciences, Leipzig

William Saurin

Genomining, Montrouge

Klaus Scherrer

Univ. Paris 7

Stefan Schuster

University of Jena

Moritz Schütte

Max Planck Institute of Molecular Plant Physiology, Potsdam

Jean-Marc Schwartz

University of Manchester

Tomer Shlomi

Technion University

Katja Shuerer

Genomining, Montrouge

Erkki Somersalo

Case Western Reserve University, Cleveland

Nikolaus Sonnenschein

Jacobs University Bremen

Balazs Szappanos

Biological Research Center of the Hungarian Academy of Sciences, Szeged

Patricia Thebault

Université Bordeaux 2

Jean-Francois Tomb

DuPont, Wilmington

Alexander Ullrich

University Leipzig

Yves Vandenbrouck

CEA, Grenoble

Gilles Vieira

Genoscope - CEA, Evry

Scientific Organizers

Jürgen Jost

Max-Planck-Institut für Mathematik in den Naturwissenschaften Homepage

Pierre-Yves Bourguignon

Max-Planck-Institut für Mathematik in den Naturwissenschaften

Areejit Samal

Max-Planck-Institut für Mathematik in den Naturwissenschaften Homepage

Administrative Contact

Antje Vandenberg

Max-Planck-Institut für Mathematik in den Naturwissenschaften Contact by email

Areejit Samal

Max-Planck-Institut für Mathematik in den Naturwissenschaften Contact by email