MiS Preprint Repository
We have decided to discontinue the publication of preprints on our preprint server end of 2024. The publication culture within mathematics has changed so much due to the rise of repositories such as ArXiV (www.arxiv.org) that we are encouraging all institute members to make their preprints available there. An institute's repository in its previous form is, therefore, unnecessary. The preprints published to date will remain available here, but we will not add any new preprints here.
Brownian motion tree models are toric
Bernd Sturmfels, Caroline Uhler and Piotr ZwiernikAbstract
Felsenstein's classical model for Gaussian distributions on a phylogenetic tree is shown to be a toric variety in the space of concentration matrices. We present an exact semialgebraic characterization of this model, and we demonstrate how the toric structure leads to exact methods for maximum likelihood estimation. Our results also give new insights into the geometry of ultrametric matrices.
- Received:
- 27.02.19
- Published:
- 13.03.19